"""
mpld3 Utilities
===============
Utility routines for the mpld3 package
"""
from . import urls
from functools import wraps
from os import path
import csv
import inspect
import os
import re
import shutil
import warnings
import numpy as np
# Make sure that DeprecationWarning gets printed
warnings.filterwarnings('always', category=DeprecationWarning, module='mpld3')
[docs]
def html_id_ok(objid, html5=False):
"""Check whether objid is valid as an HTML id attribute.
If html5 == True, then use the more liberal html5 rules.
"""
if html5:
return not re.search('\s', objid)
else:
return bool(re.match("^[a-zA-Z][a-zA-Z0-9\-\.\:\_]*$", objid))
[docs]
def get_id(obj, suffix="", prefix="el", warn_on_invalid=True):
"""Get a unique id for the object"""
if not suffix:
suffix = ""
if not prefix:
prefix = ""
objid = prefix + str(os.getpid()) + str(id(obj)) + suffix
if warn_on_invalid and not html_id_ok(objid):
warnings.warn('"{0}" is not a valid html ID. This may cause problems')
return objid
[docs]
def deprecated(func, old_name, new_name):
"""Decorator to mark functions as deprecated."""
@wraps(func)
def new_func(*args, **kwargs):
warnings.warn(("{0} is deprecated and will be removed. "
"Use {1} instead".format(old_name, new_name)),
category=DeprecationWarning)
return func(*args, **kwargs)
new_func.__doc__ = ("*%s is deprecated: use %s instead*\n\n "
% (old_name, new_name)) + new_func.__doc__
return new_func
[docs]
def write_ipynb_local_js(location=None, d3_src=None, mpld3_src=None):
"""
Write the mpld3 and d3 javascript libraries to the given file location.
This utility is used by the IPython notebook tools to enable easy use
of mpld3 with no web connection.
Parameters
----------
location : string (optioal)
the directory in which the d3 and mpld3 javascript libraries will be
written. If not specified, the IPython nbextensions directory will be
used. If IPython doesn't support nbextensions (< 2.0),
the current working directory will be used.
d3_src : string (optional)
the source location of the d3 library. If not specified, the standard
path in mpld3.urls.D3_LOCAL will be used.
mpld3_src : string (optional)
the source location of the mpld3 library. If not specified, the
standard path in mpld3.urls.MPLD3_LOCAL will be used.
Returns
-------
d3_url, mpld3_url : string
The URLs to be used for loading these js files.
"""
if location is None:
try:
from IPython.html import install_nbextension
except ImportError:
location = os.getcwd()
nbextension = False
else:
nbextension = True
else:
nbextension = False
if d3_src is None:
d3_src = urls.D3_LOCAL
if mpld3_src is None:
mpld3_src = urls.MPLD3_LOCAL
d3js = os.path.basename(d3_src)
mpld3js = os.path.basename(mpld3_src)
if not os.path.exists(d3_src):
raise ValueError("d3 src not found at '{0}'".format(d3_src))
if not os.path.exists(mpld3_src):
raise ValueError("mpld3 src not found at '{0}'".format(mpld3_src))
if nbextension:
# IPython 2.0+.
# This will not work if a url prefix is added
prefix = '/nbextensions/'
def _install_nbextension(extensions):
"""Wrapper for IPython.html.install_nbextension."""
import IPython
if IPython.version_info[0] >= 3:
for extension in extensions:
install_nbextension(extension)
else:
install_nbextension(extensions)
try:
_install_nbextension([d3_src, mpld3_src])
except IOError:
# files may be read only. We'll try deleting them and re-installing
from IPython.utils.path import get_ipython_dir
nbext = os.path.join(get_ipython_dir(), "nbextensions")
for src in [d3_src, mpld3_src]:
dest = os.path.join(nbext, os.path.basename(src))
if os.path.exists(dest):
os.remove(dest)
_install_nbextension([d3_src, mpld3_src])
else:
# IPython < 2.0 or explicit path.
# This won't work if users have changed the kernel directory.
prefix = '/files/'
d3_dest = os.path.join(location, d3js)
mpld3_dest = os.path.join(location, mpld3js)
for src, dest in [(d3_src, d3_dest), (mpld3_src, mpld3_dest)]:
try:
shutil.copyfile(src, dest)
except IOError:
# file may be read only. We'll try deleting it first
if os.path.exists(dest):
os.remove(dest)
shutil.copyfile(src, dest)
return prefix + d3js, prefix + mpld3js
[docs]
def load_test_dataset(dataset):
"""
Loads test data from included CSV files.
Parameters
----------
dataset : string
The name of the dataset. Available options are: "iris".
"""
curr_dir = path.dirname(inspect.getfile(lambda: None)) # oof
with open(path.join(curr_dir, "testdata", dataset + ".csv"), "r", encoding="utf-8") as csv_file:
data_file = csv.reader(csv_file)
temp = next(data_file)
n_samples = int(temp[0])
n_features = int(temp[1])
target_names = np.array(temp[2:])
data = np.empty((n_samples, n_features))
target = np.empty((n_samples,), dtype=int)
for i, ir in enumerate(data_file):
data[i] = np.asarray(ir[:-1], dtype=np.float64)
target[i] = np.asarray(ir[-1], dtype=int)
return data, target, target_names